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Open Source Molecules

Posted by Zonk on Mon Jun 20, 2005 03:52 AM
from the chemistry-for-the-people dept.
manganese4 writes "They've been discussed before in relation to Google, but the American Chemical Society has launched a new effort against perceived competitors. They are attempting to limit the government's ability to freely publish the results of scientific work paid for by tax dollars. The British journal Nature and the Univeristy of California reports on efforts by the ACS in attempting to shutdown a free database, PubChem, of molecular structures because it competes head to head with the fee-for-service Chemical Abstract Service. Their rationale is that the government should not spend taxpayer dollars on something private business is already doing. Luckily the government has not backed down."
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  • Why is it that people always see public and private services as mutually exclusive options?

    For instance, private and public health care as well as transportation work very well together.

    • it seems that they are threatened financially by this. I wonder how many universities would make a switch or use PubChem as a supplement?
      • it seems that they are threatened financially by this.

        Yes, sure, but isn't it essential for a business to come up with something that justifies the cost of their services? In healthcare business private clinics you get to see a specialist sooner. In public transportation it means being able to get a taxi instead of having to wait for a bus/underground.

        It's outrageout to say "we produce the same data, so the government should get out of our business". ACS should come up with other services (data mining, consultation,...) by which it differentiates itself from the free service.

          • For one, if my tax dollars are funding the research, why shouldn't I have open access to the findings? If private companies want to keep this stuff private, let them do it without tax-based assistance. They're free to charge for their findings, but the gov't shouldn't suppress the free dissemination of data from tax-funded research just because somebody else was previously making a buck on it. The private company will have to find a way to add value such to justify the cost of their service. That's how
      • it seems that they are threatened financially by this.

        And it's the goverment's role (on behalf of the people, remember) to reply by saying "so?".

        It's always possible that the people would be better of if the company has "unfair" competition from subsidised government services, or even is put out of business by this. In theory, governments serve people before companies.
    • by /ASCII (86998) on Monday June 20 2005, @04:03AM (#12861277) Homepage
      So true. I live in Sweden, and here there are laws prohibiting most forms of private healthcare, private transportation, etc. In America, there seems (at least from what we get reported here in Sweden) to be a strong movement to prohibit public broadband efforts, public chemical databases, etc.

      I am a big fan of small government, but in my book, small government means fewer laws and the possibility for the government to take swift action. If it the private sector is overpricing something that can benefit the community, I don't see why there should be laws agains the government providing a little competition.
      • I live in Sweden, and here there are laws prohibiting most forms of private healthcare, private transportation, etc.

        Um, I'm Swedish, and that's rather an overstatement. Private health care is certainly allowed - you're not allowed to use your public health insurance for it, though, but have to pay out of your own pocket. Quite different.

        And what kind of private transportation is not allowed?

    • by noamt (317240) on Monday June 20 2005, @06:19AM (#12861676) Homepage Journal

      Service.java:2: illegal combination of modifiers: public and private
      public private void service() {
      ^
      1 error
  • by cahiha (873942) on Monday June 20 2005, @03:57AM (#12861257)
    Data mining is becoming more and more important for science. But you can't do data mining if the data is locked up and requires cumbersome and costly subscriptions to access.

    Chemical, biological, and other scientific databases need to be open, free, and freely redistributable for science and technology to continue to make rapid progress.
  • by that logic (Score:5, Insightful)

    by poor_boi (548340) on Monday June 20 2005, @03:59AM (#12861265)
    Their rational is that the government should not spend taxpayer dollars on something private business is already doing.

    Guess we can shut down public schools then, now, eh?

    • Guess we can shut down public schools then, now, eh?

      Law enforcement can be outsourced to some good company who could make law enforcement robots with human brains, too!

      Stop wasting taxplayers' money on something that can be done well by profit making companies!
    • Don't forget the military , plenty of Mercenaries out there to do that job.
      Police , forget about it . countless security companies and organised crime rackets to do protection.
      Review of laws and making new laws , well there are plenty of private companies who can review legal papers.
      Budget , who needs the cabinet , Plenty of accountancy firms .
      Who needs public libraries when there are book shops.
    • Access to high level chemical and biological research material is hardly a basic service like education.

      But, as long as you bring it up, government funded and regulated education is a horrible scam. It's wasteful, it's ineffective, in many cases it repropagates complete falsehoods (eg. Pearl Harbor, the reason why the bomb was dropped on Hiroshima and Nagasaki, and the motives and causes behind the 1929 stock market crash, the Great Depression, and the creation of the Federal Reserve), and in today's worl
  • Adjective != Noun (Score:2, Insightful)

    by Anonymous Coward
    Their rational is that...

    That's rationale, you illiterate clod.
  • Well, then... (Score:4, Insightful)

    by JanneM (7445) on Monday June 20 2005, @04:01AM (#12861273) Homepage
    I guess your government shouldn't be paying for any of the research either, then, including the research done by graduate and doctoral students. Maybe time to send a bill to every company employing one of those people?
    • Maybe there's a good reason for wanting to reevaluate funding sources and access to data.

      Why should you, as a taxpayer who doesn't give a rat's butt about advanced research in niche fields like Density Functional Theory, or 3+2 cyclizations, or Palladium catalyzed cross-coupling, be forced to pay for the infrastructure for the government to make this information available to you?

      I'm a chemist, I like this stuff but this is really information that should be on a subscription basis. If you like it, you'll
      • Why should you, as a taxpayer who doesn't give a rat's butt about advanced research in niche fields like Density Functional Theory, or 3+2 cyclizations, or Palladium catalyzed cross-coupling, be forced to pay for the infrastructure for the government to make this information available to you?

        Because you, as a taxpayer, already paid for said advanced research, because it's important for the greater good of the nation and private companies won't fund it. Why should you then be forced to pay a private entit
      • Why should you, as a taxpayer who doesn't give a rat's butt about advanced research in niche fields like Density Functional Theory, or 3+2 cyclizations, or Palladium catalyzed cross-coupling, be forced to pay for the infrastructure for the government to make this information available to you?

        Because we live in a society. Because we understand that the point of research is not solely to have direct, obvious applications to everybody's life. Basic research benefits the society in many indirect ways, and th

  • So when... (Score:5, Funny)

    by Vo0k (760020) on Monday June 20 2005, @04:07AM (#12861291) Journal
    When Osama Bin Laden will apply for US govt to remove and stop funding the US Army, because private parties (him) own private military groups?
    Corporate-owned Police, IRS replaced by Mafia, and of course schools under management of MTV. Go Private Property!
  • I'm generally against the idea of the government spending money obtained through illegal, coercive measures (read: taxes) on much of anything. That said, scientific research is probably one of the best uses they can make of the money they steal from us... so as long as they're going to continue stealing our money, I think resources like this should be kept freely available to the public. After all, we **already paid for it.**
      • by /ASCII (86998) on Monday June 20 2005, @05:12AM (#12861461) Homepage
        The arguiment boils down to 'Taxation is theft, since it restricts the right to own property'.

        This is a extremist stance that has been discussed many times [google.se].

        If taxation is theft, you should refuse to pay taxes, but if you do, the repo men will come and invade your property, at which time you will be forced to defend yourself and your propery, which will lead to police actions that most probably result in your death. If you however survive, you will be sent to prison where you in all probability will be raped. Hence, taxation is also either murder or rape. But we already knew the latter.
        • You don't understand the Libertarian mindset. Libertarians think they're smarter and more capable than the average man, and thus will be in the upper classes were a Libertarian form of government instituted. Thus they'll personally benefit from it, and they don't give a fuck about anyone else.

          Absolutely not. Your FUD is so ludicrous as to not even be worth consideration. You're speaking of yourself and what would happen if you were the State. Libetarians don't think they are superor or better than anyo

  • Adapt or die... (Score:3, Interesting)

    by Eric Damron (553630) on Monday June 20 2005, @04:21AM (#12861324)
    When will society become outraged at the corporate mindset? The mindset that says that society can not be enriched if it costs the corporation or in this case the "not-for-profit" organization?

    It is unfortunate that the only way that society can protect itself is to become and stay fighting mad. I don't want to be angry all of the time but the world is filled with greedy assholes who would turn our world into a hopeless pit of poverty if left unchecked.

    Can a Utopian world where even the poorest among us can live comfortably and a corporate world where piggy CEOs can slurp up million dollar salaries coexists? If not, I for one choose Utopia.

    So I say to all of the greedy sons-of-bitches "Don't get in the way of a better world. Adapt or die!"
    • Re:Adapt or die... (Score:4, Insightful)

      by Jim_Callahan (831353) on Monday June 20 2005, @05:22AM (#12861500)
      "When will society become outraged at the corporate mindset?"


      When it stops working so well. The corporate mindset produces what my classmates would term a "fuckton of money", which makes "a Utopian world where even the poorest can live comfortably" an actual possibility instead of the unattainable, wild goose chase that most slashdotters would use the ideal as in order to trick people into conforming to their stupid ideas regarding economics.

      There. Was that outraged enough for ya? I can add more smouldering rhetoric, if you want.
  • by Anonymous Coward on Monday June 20 2005, @04:21AM (#12861325)
    Just from glancing at the PubChem site, it seems like its main function at the moment is to find journal articles relevant to a given chemical. This is probably what worries the ACS most, as there are already plenty of databases online that provide info about chemical properties (such as the NIST Chemistry Webbook or the Spectral Database Server), they just don't link to journal articles. It would be fairly outrageous for the ACS to complain about these.

    At any rate, the ACS's complaints seem pretty silly to me, as I only know of a few systems for finding chem journal articles (CAS, Beilstein and SciFinder Scholar). I would guess they're all horrendously expensive, and only accessible to individuals at university libraries, so a free system like this would certainly be great for the average citizen. Additionally, it may well be worth the government's while, in terms of cost, to develop a free system for their own use.
  • by otter42 (190544) on Monday June 20 2005, @04:29AM (#12861350) Homepage Journal
    Who finds it ironic that Nature charges for access to an article championing free access to information?
  • Out of context!!! (Score:5, Informative)

    by robotkid (681905) on Monday June 20 2005, @04:44AM (#12861384)
    I've been following this debate, alot of high-profile journals are full of opinion articles on this. But here's some context for all those too lazy to RTFA: ACS publishes "SCIFINDER" and "CHEMICAL ABSTRACTS" which is NOT a database of journal papers. It is a database of chemical structures and properties which is invaluable to any research chemist because a) most information on exotic compounds are not published in journals and b) even if they were you'd have a very hard time searching journals for occurences of chemical compounds. (FYI most of this info was probably NOT gained through tax-funded research, it's mostly industrial) Just about every chemistry lab in the nation has to pay a subscription for this service, but it obviously requires many, many curators to keep up to date because of the crazy amount of info out there. ACS is a nonprofit organization and it uses the proceeds to fund things like scientific meetings and putting every journal article from the last 100 years online (they are way ahead of most journals that only have 5 or 10 years online).

    That being said it is strange that they are so vehemently against an NIH database which is primary geared towards biological compounds (i.e. proteins and nucleic acids and derivatives) which is pretty orthogonal to most of the chemical research world. But it would be a gross oversimplification to paint the ACS as an evil money grubbing organization.

    Besides, chemists are rarely evil. Science fiction proves it's always an overweight doctor come-geneticist played by marlon brando that's evil.

  • And vica vrsa? (Score:5, Insightful)

    by Mac Degger (576336) on Monday June 20 2005, @06:11AM (#12861644) Journal
    "Their rational is that the government should not spend taxpayer dollars on something private business is already doing"

    Of course, you can turn this around: private business shouldn't spend its investor's money on something the government is already doing.
  • by paiute (550198) on Monday June 20 2005, @07:47AM (#12862160)
    The ACS is a useless organization, and I speak as a practicing chemist of many years. Nothing - and let me repeat this for emphasis - nothing that they have done has ever had any positive impact on my job or career. I toss their monthly letter inviting me to rejoin unopened into the trash. It would be money flushed down the toilet. They could disappear tomorrow, and I would not notice. Except for less junk mail, I guess.

    Can you tell that I think they are a bunch of worthless pantloads? Just checking.

  • by cabalamat2 (227849) on Monday June 20 2005, @08:40AM (#12862531) Homepage Journal
    Obviously the government shouldn't have a police force, since that takes businress away from private security companies. Nor should the government run schools, since that takes money away rom private education. And having an army is unfair competition for mercenaries.
  • Now where's the common sense here?

    If molecules are open source, then people will be able to make them in their own homes, without appropriate supervision or regulation. Many people may not be aware of the following facts about molecules.

    -All known chemical poisons are made of molecules.
    -Osama bin Laden's men were carrying molecules when they boarded the aircraft destined to strike the WTC towers. It is believed these molecules were used in the attack.
    -Molecules are frequently used as part of copyright infringement schemes. Bootleg DVDs contain high concentrations of molecules.
    -Weapons of mass destruction contain molecules.

    Please, will someone think of the of children?

  • Weird logic (Score:4, Insightful)

    by bitspotter (455598) on Monday June 20 2005, @11:38AM (#12864257) Journal
    By this reckoning, Government should shut down police forces because we have private security firms we can all hire. ...or they should be prohibited from offering free municipal wireless services because there are existing ISPs that can charge to do it.

    When did government begin existing at the behest of profiteers?
    • by JanneM (7445) on Monday June 20 2005, @04:13AM (#12861301) Homepage
      Government shouldn't pay for something that the private sector is already doing. Full stop.

      So if I start my own fire brigade I should demand that publicly funded fire fighing be outlawed?

      Libraries should be closed since booksellers are missing out on sales?

      Private schols certainly have a distorted market with public schools being provided.

      Who decides what is critical for the government to provide? Would you not say that health care, for instance, falls under providing safety?
    • by redcone (838393) on Monday June 20 2005, @04:14AM (#12861305) Homepage
      It is not about government encroachment. it is about the right of the taxpayers to freely access the results of research paid for by public taxes and not having it "claimed" as the private property" of a for profit organization.

      The question of whether governments should finance research is a separate issue.

      • I recall a recent story about NOAA data. How Accuweather had some beef with publicly available weather informaiton, which the tax payers had already paid for, because they were trying to sell it.

        I for one do not feel like paying for the same thing twice.
    • by A beautiful mind (821714) on Monday June 20 2005, @04:17AM (#12861314)
      A government is an entity which should protect a group of people's interests, namely the citizens of a nation. This includes science.

      Also, i believe that scientific knowledge is not even the property of humanity, let alone a corporation. It is fine that they want to sell that information as long as a free choice exists, but when they try to get rid of that free "competition", then we need to take a stand. Science should be open for everyone, the application of science is where companies should strive for profit.

      It is possible to consider science the ultimate law of the universe, thus if viewed from this perspective restricting scientific knowledge would be the same as damaging a person's freedom.
    • by /ASCII (86998) on Monday June 20 2005, @04:19AM (#12861321) Homepage

      If we accept that it is the government's job to research medicine, should we also accept that it is the government's job to provide that medicine? Such a system in which we rely on the government to do something automatically puts downward pressure on the current providers of that service.


      In other words, you belive that if the government provides a service it will do so cheaper and better than the private sector, and push them out of the market. I simply don't belive that. The only way that can happen is if public companies manage to change the law in their favour. Otherwise, free competition will in the long run favour the private sector.

      All these companies that are complaining about the government taking away their profit by competing with them are doing is whine about the fact that they're losing grip of their monopoly and have to start competing. If the private sector is so bad at providing a service that even public companies are able to compete with them, they truly need the competition.
    • Your libertarian ideology, as ever, has little thought for practical matters.

      Libertarians argue, for instance, that there should be no public health care and that people should have to pay. Ignoring the fact that it is rather inhumane to demand payment for healing someone, this results in poor people suffering as they cannot afford medical bills. What, exactly, is wrong with a government monopoly over this? By promoting private health care, libertarians are, in effect, causing illness and lowering the life expectency of fellow human beings. I simply say, put yourself in their shoes.

      Another example: here in the UK we have the BBC. The BBC's website is probably one of the most linked-to websites from Slashdot, because it is a fantastic public interest resort. It's publically funded. UK citizens, on trips to the US, comment how low quality, and advert-rife, US television is compared to even commercial channels in the UK. This is because the BBC ups the standard and creates a high level for other channels to achieve. Note that the BBC is not the only provider of TV channels!

      The government's job is (or should be!) to keep people alive. Sure, this should be done by having a military, police and courts. But everyone loses out if we allow corporations to monopolise fundamental human rights like the most important of all, the right to life.

      Libertarianism is too much an ideology, with too little thought for the real world. Please reconsider your views, with more compassion for people who are likely to suffer because of them.

      Chris
      • One of the methods of thought in the US is that, because our system of laws is (in theory) based purely on logic and not on emotional appeal. Please stop using emotional appeals to get laws passed ("Think of the children!"). Instead, try something like "providing universal health care will decrease crime, and by transitivity, prevent the use of force."
          • If you read what the Constitution is based on (John Locke's writings, primarily), you will see that the origins of our system are based on the idea that the Constitution is a paper document which delineates goals and rules, and in order to have a fair society, emotion must be avoided when making decisions.

            Murder is logical because the US was founded on the principles of preventing the use of force (a Libertarian ideal, mind you), and preventing/punishing murder is preventing/discouraging the use of force.
      • by meburke (736645) on Monday June 20 2005, @05:35AM (#12861521)
        Attacking the argument because it sounds like Libertarianism invalidates your response on rhetorical grounds, just as I would invalidate my response if I attacked you as a Socialist. Your comparison of television quality is not relevant to the issues at hand.

        IMO, if the government (read the taxpayers) pays for the research, then the results should be distributed. It is no longer proprietary, and the ACS has no right to lock up the information.

        The other issue is, "Should the government be paying for the research?" Well, IMO, the only legitimate use of the national government is for National Defense and the administration of Justice.

        The strength of our administration of justice (which is certainly NOT perfect) is well illustrated by the ease with which we in the US can obtain title or ownership of private property such as cars and land, compared to say, Central America or Mexico.

        When the government re-allocates confiscated wealth (tax dollars), it funds inefficient industries and gives an unfair advantage to a select few. In the US, this has never been demonstrated more clearly than government funding of the railroads: The only profitable, efficient railroad in the American West was the Great Northern, which was unsupported by government funds and financed by Henry Hill and investors. We won't know what effect the the government has on our industrial development until some time in the future when we can look back and analyze it. I'm pretty certain that government programs are somewhat beneficial, but I believe that private enterprise would be more beneficial in the long run.

        Who knows what chemical research is not being done because there's more funding in a competitive area?

        Also, in my mind, a bigger question is not, "Should they?" or "Shouldn't they?", but "What is the best way of overcoming the shortcomings of both paths?"

        Now, on a personal note: I'm NOT a big fan of the UK. They have one of the worst records for civil rights of any government on earth, my "Economist Pocket World in Figures" indicates that the US purchasing power is second-highest in the world and about 20% greater than the UK, Canada, Japan and Germany, I'm apalled that the people of the UK let the government confiscate their personal property (such as weapons collections after the 1988 Security Act), and that, while homicides have declined in the UK, other violent crime is growing significantly, that heart transplants and bypasses (which can be gotten in the US within a couple of weeks) take an average of 3 months in the UK (if they will let you have one), and much, much more.

        Oh, yeah, British TV sucks (boring), but people who live their lives to suck on the glass teat get what they deserve. American TV isn't any better.
    • Perhaps you're right, but the research done for this database was done using tax money, not private money. If the database was managed by a private institution, that would mean tax payers would pay for it twice.
    • by ooze (307871) on Monday June 20 2005, @04:34AM (#12861359)
      You're right. Publicly funded research should be abolished. Nothing that has ever come out of any public university should be available for free. Who needs such things as theory of relativity, quantum theory, Space programs with all the technology coming from it.

      Give me abreak...there is too much work that needs to be done, but that no company would do, because it doesn't pay off quickly enough. See, I'm not even saying not paying off. Just not paying off in the same year, or the next year.
      See all the hoopla about the cell processor. That was a joint venture of 3 of the biggest private corporations out there...and one of the biggest undertakings of private enterprises. The investment was something like 2 billions, the timeframe was something like 4 years. That is about the most extreme limit any private research and enginieering project would go. Any research, that needs more time and dedication simply wouldn't exist without payment of the gouvernment.
    • Medieval thinking (Score:4, Interesting)

      by golodh (893453) on Monday June 20 2005, @04:38AM (#12861365)
      This type of thinking reminds me of Europe in the Middle Ages. Guilds were then allowed to regulate (read monopolise) all branches of industry and trade, backed by government enforcers. Even the most basic information was "trade secret" and not to be revealed to non guildmembers. The perfect job protection scheme, and one of the reasons that Europe was at that time eclipsed by the Arab world in scientific, medical, and technological achievements. I submit that the Government, in looking after the public interest, has every right to support valuable generation (universities) and dissemination (universities and this online service) of knowledge. And since when did the ACS acquire copyright on basic chemical knowledge?
    • by Tim C (15259) on Monday June 20 2005, @04:40AM (#12861373)
      should we also accept that it is the government's job to provide that medicine?

      Speaking as someone who has benefited directly and indirectly from a nationalised health service, I say yes, most certainly it is.

      Hell, it's rare that I actually require its services, but I don't bergudge the tax I pay to support it at all. Just because *I* don't need it, doesn't mean that my friends and loved ones don't. Even if they don't, people will, and I for one don't mind paying a little extra every month to help make society that little bit better.

      Let me ask yo ua question: why must everything be about profit? Why can some things not be done simply because it is the right thing to do?
      • by Tim C (15259) on Monday June 20 2005, @04:46AM (#12861393)
        Oh, and I forgot to mention - despite having the NHS here in the UK, we still have a thriving private healthcare system, for those who have the money to pay for it.

        Just because the government provides something for the good of all, doesn't mean that companies will find it impossible to make money providing the same thing. It's just like any other form of competition - you just have to find a way to differentiate your offering, and make it more compelling to some section of the target demographic.
    • Government shouldn't pay for something that the private sector is already doing. Full stop.

      "Full stop"? Oh brother.

      As a tax-payer, I'm rather more concerned that my tax-dollars be spent well and for good-purpose.

      Often private companies can indeed do a better job, and it's good if the government gets out of the way in such cases (easier said than done of course).

      However, sometimes it just doesn't work out that way. Some tasks are accompanied by burdens of transparency, accountability, fairness, etc., and efficiency isn't the most important factor; in such cases the a government agency may just work better in practice, despite inefficiency.
    • "The government's job is (...) Military, Police, and Courts."

      There is no such thing as an intrinsic State mission. Anarcho-capitalist theorists such as Murray Rothbard suggest to privatize military, police and courts.

      In a nation, the authority's job is whatever the people decide it is. This can be as little or as much as they want. It is a mere matter of taste.
    • Total BS.

      You do realize that the government gives grants and scholarships to students right?

      I think you have a very naive view of the role of Government. It's not just to play police but also to make sure the various facets of your daily life go smoothly.

      Do you like food that doesn't kill you or drugs that are effective? That's the FDA.

      Do you like knowing you won't be defrauded by huge companies [*] or investment scams? That's SEC.

      Do you like knowing that your kids can go to a school where there are minimal standards that are required to advance? That's another facet of state government.

      Do you like driving on roads with street signs and lights?

      Do you like electricity that follows north american standards?

      Do you like standard cryptography that can protect [**] your banking and medical transactions?

      etc, etc, etc...

      The government has a hand in many aspects of your daily life that you either ignore or didn't know about.

      Yes, all these things could be ran by the CEO of their respective companies. Schools could have their own curriculum and standards. Water plants could have their own levels of "clean enough". etc, etc, etc...

      You vote for your government to represent you on these issues. That's why you have NIST for example.

      In the case of a chemical database there is no reason why a publicly funded org can't do it. If it's the will of the people then so be it.

      Tom
      • he gets paid more than the president?

        Most of the executives of mid-to-large sized companies make more than the president. And that includes "non-profit" companies, which just mean they don't generate any net revenue, not that their employees don't make a ton of money out of some mythical sense of benevolence (although, non-profits do have an amazing ability to con such benevolent people into volunteering at the lowest levels, doing the gruntwork for free so the CEO can take home 2.5 million instead of a